{
  "_id": "6a141cbfacfb0bcc41d3da85",
  "Package": "vaxpmx",
  "Type": "Package",
  "Title": "Vaccines Pharmacometrics",
  "Version": "0.0.6",
  "Date": "2024-11-20",
  "Authors@R": "c(\nperson(\"Julie\", \"Dudasova (MSD)\", email = \"julie.dudasova@merck.com\", role = c(\"aut\", \"cre\"))\n)",
  "Maintainer": "Julie Dudasova (MSD) <julie.dudasova@merck.com>",
  "Description": "Estimate vaccine efficacy (VE) using immunogenicity data.\nThe inclusion of immunogenicity data in regression models can\nincrease precision in VE. The methods are described in the\npublications \"Elucidating vaccine efficacy using a correlate of\nprotection, demographics, and logistic regression\" and\n\"Improving precision of vaccine efficacy evaluation using\nimmune correlate data in time-to-event models\" by Julie\nDudasova, Zdenek Valenta, and Jeffrey R. Sachs (2024).",
  "License": "GPL-3",
  "Copyright": "Copyright © 2024 Merck & Co., Inc., Rahway, NJ, USA and its\naffiliates. All rights reserved.",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-25 09:52:51 UTC",
    "User": "root"
  },
  "Author": "Julie Dudasova (MSD) [aut, cre]",
  "Repository": "https://vavrycuk-zz.r-universe.dev",
  "Date/Publication": "2024-11-20 11:30:03 UTC",
  "RemoteUrl": "https://github.com/cran/vaxpmx",
  "RemoteRef": "HEAD",
  "RemoteSha": "7f63daf07a00396acce77b16e70cae5c3eec449e",
  "MD5sum": "91c41bffdcdd1b5b88cae982f0c867a0",
  "_user": "vavrycuk-zz",
  "_type": "src",
  "_file": "vaxpmx_0.0.6.tar.gz",
  "_fileid": "db54cefef564acade133acafa26d8eb0d754fdec4d1fe077123ab72da2a4e7dc",
  "_filesize": 133706,
  "_sha256": "db54cefef564acade133acafa26d8eb0d754fdec4d1fe077123ab72da2a4e7dc",
  "_created": "2026-05-25T09:52:51.000Z",
  "_published": "2026-05-25T09:56:15.849Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77691787378,
      "time": 123,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7195905722"
    },
    {
      "job": 77691787377,
      "time": 115,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7195903901"
    },
    {
      "job": 77691787379,
      "time": 128,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7195902233"
    },
    {
      "job": 77691787371,
      "time": 175,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7195909100"
    },
    {
      "job": 77691476185,
      "time": 142,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195874341"
    },
    {
      "job": 77691787359,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195899683"
    },
    {
      "job": 77691787419,
      "time": 90,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7195897917"
    },
    {
      "job": 77691787413,
      "time": 78,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7195894601"
    },
    {
      "job": 77691787437,
      "time": 73,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7195893230"
    }
  ],
  "_buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/vaxpmx",
  "_commit": {
    "id": "7f63daf07a00396acce77b16e70cae5c3eec449e",
    "author": "Julie Dudasova (MSD) <julie.dudasova@merck.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.6\n",
    "time": 1732102203
  },
  "_maintainer": {
    "name": "Julie Dudasova (MSD)",
    "email": "julie.dudasova@merck.com",
    "login": "vavrycuk-zz",
    "description": "",
    "uuid": 9332849
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "version": ">= 3.5.2",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "version": ">= 7.3-51.6",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.0.0",
      "role": "Imports"
    },
    {
      "package": "survival",
      "version": ">= 3.2-11",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "vavrycuk-zz",
      "count": 2,
      "uuid": 9332849
    }
  ],
  "_userbio": {
    "uuid": 9332849,
    "type": "user",
    "name": "vavrycuk-zz"
  },
  "_downloads": {
    "count": 566,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vaxpmx"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/vaxpmx.html",
    "manual.pdf"
  ],
  "_realowner": "vavrycuk-zz",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.3",
      "date": "2024-02-28"
    },
    {
      "version": "0.0.6",
      "date": "2024-11-20"
    }
  ],
  "_exports": [
    "coxphParametricSampling",
    "EfficacyCI",
    "glmParametricSampling",
    "ve"
  ],
  "_datasets": [
    {
      "name": "data_temp",
      "title": "Example of a hypothetical vaccine clinical trial data set",
      "object": "data_temp",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "nAb1",
        "nAb2",
        "group",
        "vaccine",
        "type_disease",
        "disease_any",
        "time_event"
      ],
      "rows": 600,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "coxphParametricSampling",
      "title": "Accounting for the uncertainty on the fitted '\"coxph\"' model and observed data",
      "topics": [
        "coxphParametricSampling"
      ]
    },
    {
      "page": "data_temp",
      "title": "Example of a hypothetical vaccine clinical trial data set",
      "topics": [
        "data_temp"
      ]
    },
    {
      "page": "EfficacyCI",
      "title": "Efficacy summary (mean, median, confidence intervals)",
      "topics": [
        "EfficacyCI"
      ]
    },
    {
      "page": "glmParametricSampling",
      "title": "Accounting for the uncertainty on the fitted '\"glm\"' model and observed data",
      "topics": [
        "glmParametricSampling"
      ]
    },
    {
      "page": "vaxpmx",
      "title": "vaxpmx",
      "topics": [
        "vaxpmx"
      ]
    },
    {
      "page": "ve",
      "title": "Vaccine efficacy estimation",
      "topics": [
        "ve"
      ]
    }
  ],
  "_readme": "https://github.com/cran/vaxpmx/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "survival",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "vaxpmx",
  "_universes": [
    "vavrycuk-zz"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.6",
      "date": "2026-05-25T09:54:49.000Z",
      "distro": "noble",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "814accec3ccee5bd0a5c2f71f5aed77cdb4d64ccbe67c24a3564f1a5f68fc6d9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.6",
      "date": "2026-05-25T09:54:43.000Z",
      "distro": "noble",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "bfba84ddc42b68e143fd978abae18e00c6b100456295b9a1e9f393adf6ae8fc4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.6",
      "date": "2026-05-25T09:54:44.000Z",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "bf2e09a08335780e5a91e850e62a952c19f1a193ba3da8dcb76a659fe05638cb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.6",
      "date": "2026-05-25T09:55:04.000Z",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "57f9a5c2ac83c9b8e97b5b21b6e94a6ae13b5e11686c3d352c7075cbbe9dc065",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.6",
      "date": "2026-05-25T09:54:45.000Z",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "c5621c47a05ea073d1ef11e9c26081b350d719eb9705faabcd4d2104317752e2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.6",
      "date": "2026-05-25T09:54:13.000Z",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "0b08ce5cecab678c0410406dcfa606c65907977f9cf000d4577b5ab09f52aaeb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.6",
      "date": "2026-05-25T09:53:59.000Z",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "95a5281d93130b95fdd2ff1f3b73ad7fa5d57ce5bac52e658b275c62909b7c80",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.6",
      "date": "2026-05-25T09:53:54.000Z",
      "commit": "7f63daf07a00396acce77b16e70cae5c3eec449e",
      "fileid": "a9a1c4521aaf22ed3250be794808b85eefadfcb4859ffbb767a0eea063b57518",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vavrycuk-zz/actions/runs/26394375176"
    }
  ]
}